Basic Information
VIS ID
TVIS44008787
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
41354576/40888904 (Hg38)
End
41354576/40888904 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/131532; hsa-mir-101-1/Downstream/2282748;
Nearest TSS
ENST00000473358/Upstream/24990; ENST00000475060/Downstream/90431;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/4283, chr1-CpG: 132/Downstream/90294
Nearby gene
CITED4(-26558) ;
Upstream sequence
gtttatactacatgtcaccatctgaaacattttataaattatattttactttctggtttattatctttctcttctcctctccccttccctcccctcccct
Downstream sequence
caccccactagaatgtcagctccacaaggacagagatttttctttatttgcttcactgccatatccccagtgcctaaagtattgtaggtgcccagtaaat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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