VISDB Viral Integration Site DataBase

VIS ID

TVIS44008842

Fusion event

HTLV-1-LSAMP integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q13.31

Reference genome

Start

End

115660319/115941472 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-369-3p ; hsa-mir-5584-3p ; hsa-mir-552-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-3977 ; hsa-mir-6873-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-103a-2-5p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-942-5p ; hsa-mir-4680-3p ; hsa-mir-6845-3p ; hsa-mir-6832-3p ; hsa-mir-345-3p ; hsa-mir-3162-3p ; hsa-mir-3150b-5p ; hsa-mir-3150a-5p ; hsa-mir-6756-3p ; hsa-mir-4469 ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6818-3p ; hsa-mir-6888-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-630 ; hsa-mir-3120-5p ; hsa-mir-4742-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-361-3p ; hsa-mir-4778-5p ; hsa-mir-629-3p ; hsa-mir-4279 ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6868-3p ; hsa-mir-6763-3p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-3124-3p ; hsa-mir-1976 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-660-3p ; hsa-mir-3127-3p ; hsa-mir-553 ; hsa-mir-4762-3p ; hsa-mir-29b-2-5p ; hsa-mir-4256 ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p ; hsa-mir-296-3p ; hsa-mir-192-3p ; hsa-mir-342-3p

Nearest miRNA

hsa-let-7g/Upstream/1197947; hsa-mir-12124/Downstream/908805;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/156738, chr3-CpG: 75/Downstream/2055245

Nearest cancer related gene

LSAMP(TSG, No orient, 0)

Upstream sequence

tcaaaaattaaaaacaaaactaccatatgatccagcaatcccacttcttggtatgtatccaaaggaaatgaaattattaccttgaaaagttatctgtacc

Downstream sequence

gccatgttcactgcagcattaacaatcaccaacatatggaaacagcttaaatgtccatcaacagataaatgtatttaaaaattggcgcacacacacacag