Basic Information
VIS ID
TVIS44008859
Fusion event
HTLV-1-SOX30 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
157058897/157631889 (Hg38)
End
157058897/157631889 (Hg38)
Orient
+
Location type
Intronic
Target gene
SOX30
miRNAs that regulate target gene
hsa-mir-3119 ; hsa-mir-645
Nearest miRNA
hsa-mir-10397/Upstream/2802349; hsa-mir-103a-1/Downstream/2842513;
Nearest TSS
ENST00000502646/Upstream/56114; ENST00000409999/Downstream/20475;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/55715, chr5-CpG: 104/Downstream/19430
Upstream sequence
cacaatggctcatgcctgttaattccagcactttgggaggccaggagtttgaaaacagcctaggcaacaaagtgaggccctgtctctacaaaaacatgag
Downstream sequence
aatattagctgggcatggtggtgcacacctgtagtcccagttattcaggaggctgagaaagaaggatcacttaggcccaggagttcgaggctgcaatgag
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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