Basic Information
VIS ID
TVIS44008860
Fusion event
HTLV-1-LOC100506885 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
19729680/19729449 (Hg38)
End
19729680/19729449 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100506885
Nearest miRNA
hsa-mir-3691/Upstream/1157569; hsa-mir-10398/Downstream/7418177;
Nearest TSS
ENST00000381078/Upstream/38573; ENST00000378700/Downstream/5118;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/37375, chr6-CpG: 64/Downstream/75174
Nearby gene
ID4(+107921) ;
Upstream sequence
TTAAATCAAAGGTGGCTATTTCTGGAAAAGAAATAAATTCAGGCATTCAAATATAGCAGTGGTTTTATTTTATTTATTTGTTTTTCCAGTTAGAAAGCTG
Downstream sequence
CTCTGCTCAATAAGAGCCCAAATGAATGACTACATTCTTCAAAGAGACAAACTAAGGTAACCCTGATTGTTATGTTGACTTTGTTAAAGGCAATGGCCCA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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