Basic Information
VIS ID
TVIS44008900
Fusion event
HTLV-1-LOC105370461 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
39931152/39461948 (Hg38)
End
39931152/39461948 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370461
Nearest miRNA
hsa-mir-208a/Upstream/2509557; hsa-mir-1185-1/Downstream/8299047;
Nearest TSS
ENST00000550708/Upstream/29448; ENST00000556620/Downstream/12892;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/28946, chr14-CpG: 47/Downstream/2144707
Nearby gene
FBXO33(-29448) ;
Upstream sequence
gagatgaggtttcatcattttgctcaggatggtctcgatctcctgacctcgtgatctgcccgcttcagcctcccaaagtgctgggattacaggtgtgagc
Downstream sequence
caccacgcccggctgtaatttaatttttaatagattgcaagattgctttccaaaaattctgtaatacttcacattgtcactagcaatgtaggagaaccgt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate