Basic Information
VIS ID
TVIS44008912
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
73786766/72921049 (Hg38)
End
73786766/72921049 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/6644121; hsa-mir-1243/Downstream/3652519;
Nearest TSS
ENST00000502981/Upstream/351663; ENST00000502790/Downstream/148643;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/351445, chr4-CpG: 71/Downstream/148178
Nearby gene
COX18(-133647) ;
Upstream sequence
aatcagtataatactggctgtgggtctgtcatatatggcttttattatgtggaggtatgttccttttatagccagttttatgaggatttttatcataaag
Downstream sequence
aaatgctaaattttaccaaatgcttcttcagaattaattgaaatgatcatatcgtttttgcactccatcctgttgatatgaagtatcacattgattgatt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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