Basic Information
VIS ID
TVIS44008923
Fusion event
HTLV-1-LOC105376219 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
113881308/111119028 (Hg38)
End
113881308/111119028 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA9E
Target gene
LOC105376219
Nearest miRNA
hsa-let-7a-1/Upstream/1607483; hsa-mir-12126/Downstream/152128;
Nearest TSS
ENST00000422679/Upstream/80570; ENST00000374374/Downstream/165808;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/79933, chr9-CpG: 230/Downstream/363736
Nearby gene
LPAR1(-80943) ;
Upstream sequence
gctagcagtttcccatttagcttgtctacttcttactaaaaagactatgaagacaaagaaaacaaaagacaaaaattaatcacaaactaaaTCAAATAAG
Downstream sequence
TATCTTCTAATTtaaatgatctgttttatttgcctagaaatatgcatttttgtcttcaaccctacaattaaaaatgtttccaagatatatttaattatgg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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