Basic Information
VIS ID
TVIS44008927
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
117043093/116500471 (Hg38)
End
117043093/116500471 (Hg38)
Orient
-
Location type
Intronic
Target gene
CD58 ; LOC112268235
Nearest miRNA
hsa-mir-101-1/Upstream/3618342; hsa-mir-1182/Downstream/59553;
Nearest TSS
ENST00000473358/Upstream/1259; ENST00000624685/Downstream/44119;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/81551, chr1-CpG: 30/Downstream/33949
Nearby gene
CD58(-14063) ;
Upstream sequence
gtcagggtcagTAAATGTCAGGATCAGAAAATGTCTTTATAAGGGTTGAATTGCATTTCAGTTTGGACATCTGCATTTTACCATGTCAGATAATGAACTC
Downstream sequence
CTCTAACTGGTTTAGGAGATGTGACTGGCTCAGTAAAGGCCTCAAATAATCACTAGGTTTTCCTCTTTTTCCACCTGCAACATATTCAAGAATGGTTAAC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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