VISDB Viral Integration Site DataBase

VIS ID

TVIS44008955

Fusion event

HTLV-1-TLCD2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.3

Reference genome

Start

End

1608736/1705442 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-661 ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-5186 ; hsa-mir-4756-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-3679-3p ; hsa-mir-6734-3p ; hsa-mir-6742-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-361-3p ; hsa-mir-7977 ; hsa-mir-1236-3p ; hsa-mir-4267 ; hsa-mir-5588-3p ; hsa-mir-6507-3p ; hsa-mir-1303 ; hsa-mir-5089-5p ; hsa-mir-6869-5p ; hsa-mir-1200 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-767-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-6504-3p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-4438 ; hsa-mir-3149 ; hsa-mir-6872-3p ; hsa-mir-590-3p ; hsa-mir-545-3p ; hsa-mir-6858-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-377-3p ; hsa-mir-4742-3p ; hsa-mir-877-3p ; hsa-mir-5193 ; hsa-mir-1228-3p ; hsa-mir-1227-3p ; hsa-mir-1262 ; hsa-mir-1273e ; hsa-mir-3192-5p ; hsa-mir-4252 ; hsa-mir-4701-3p ; hsa-mir-4797-5p ; hsa-mir-508-5p ; hsa-mir-542-3p ; hsa-mir-6512-3p ; hsa-mir-6720-5p ; hsa-mir-6736-5p ; hsa-mir-6776-5p ; hsa-mir-6849-3p ; hsa-mir-7106-5p ; hsa-mir-766-3p

Nearest miRNA

hsa-mir-3183/Upstream/682883; hsa-mir-10226/Downstream/8461;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/20336, chr17-CpG: 88/Downstream/4490

Upstream sequence

CTCTCTATCTGCCAGTATTTCCTCCATCACTCCTGAGCCTGGGTGTTTCTCCTTGTCACTCACTCTATTTCACTGTCTAGACTCTCTGTGCCTTTCAGCC

Downstream sequence

TTGGGGTCTCTTCTTGTCGGCCTTCATTTCTATTTTTCTGGTCCTTTTTGTTTATAACCCTTTTATCAGTTCTGTGACTTTGGTGTCTCTCAGGATCTAT