Basic Information
VIS ID
TVIS44008972
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
28285469/28245850 (Hg38)
End
28285469/28245850 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/1076287; hsa-mir-10399/Downstream/1434884;
Nearest TSS
ENST00000635602/Upstream/5966; ENST00000478078/Downstream/53471;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/65231, chr7-CpG: 65/Downstream/163247
Nearby gene
JAZF1-AS1(No orient, 4473)
Upstream sequence
GTGTAGATAGAGCAagtttcctcatctgagaaatgaagggggttggaccagatatcctccaagctcccttttggctgtgacattctgtggcttcagattc
Downstream sequence
TCTTCTTCTTGGGCAGGGTTTTTGGTTTTTAGGGCACTGAACCCAAACAGCCCTACCTGCTAATTTCAGTTTGGGCTGCTGTGAAGACAAAAGGCAAGGC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate