VISDB Viral Integration Site DataBase

VIS ID

TVIS44009096

Fusion event

HTLV-1-EIF4H integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

q11.23

Reference genome

Start

End

73606405/74192075 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-24-3p ; hsa-mir-941 ; hsa-mir-93-3p ; hsa-mir-378a-3p ; hsa-mir-185-5p ; hsa-mir-149-5p ; hsa-mir-10a-5p ; hsa-mir-197-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-651-3p ; hsa-mir-1252-3p ; hsa-mir-5093 ; hsa-mir-503-5p ; hsa-mir-1252-5p ; hsa-mir-2110 ; hsa-mir-4271 ; hsa-mir-4725-3p ; hsa-mir-6828-5p ; hsa-mir-6780b-5p ; hsa-mir-370-5p ; hsa-mir-452-3p ; hsa-mir-4709-3p ; hsa-mir-3611 ; hsa-mir-8080 ; hsa-mir-4699-5p ; hsa-mir-4766-5p ; hsa-mir-5092 ; hsa-mir-562 ; hsa-mir-4422 ; hsa-mir-374a-3p ; hsa-mir-4777-5p ; hsa-mir-526a ; hsa-mir-523-5p ; hsa-mir-522-5p ; hsa-mir-520c-5p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-519a-5p ; hsa-mir-518f-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-4305 ; hsa-mir-10b-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-1245b-5p ; hsa-mir-134-3p ; hsa-mir-148b-5p ; hsa-mir-194-5p ; hsa-mir-3142 ; hsa-mir-3190-3p ; hsa-mir-3202 ; hsa-mir-3660 ; hsa-mir-3691-5p ; hsa-mir-376b-5p ; hsa-mir-376c-5p ; hsa-mir-3919 ; hsa-mir-4306 ; hsa-mir-4312 ; hsa-mir-4330 ; hsa-mir-4428 ; hsa-mir-4476 ; hsa-mir-4526 ; hsa-mir-4533 ; hsa-mir-4644 ; hsa-mir-4649-3p ; hsa-mir-4663 ; hsa-mir-4752 ; hsa-mir-5008-5p ; hsa-mir-552-3p ; hsa-mir-6089 ; hsa-mir-628-5p ; hsa-mir-6874-3p ; hsa-mir-6876-5p ; hsa-mir-7114-5p ; hsa-mir-7160-5p ; hsa-mir-8056 ; hsa-mir-8077 ; hsa-mir-196a-3p ; hsa-mir-328-5p ; hsa-mir-4742-5p ; hsa-mir-625-5p ; hsa-mir-6757-5p ; hsa-mir-6768-5p ; hsa-mir-6795-5p ; hsa-mir-6885-5p ; hsa-mir-6887-5p ; hsa-mir-7109-5p ; hsa-mir-8485

Nearest miRNA

hsa-mir-1183/Upstream/781; hsa-mir-10399/Downstream/403893;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/17064, chr7-CpG: 82/Downstream/61988

Upstream sequence

tcatcatgttagccaggatggtctcgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcccg

Downstream sequence

gccCCCACCAACAGATTTGATGAGAGATCCTTGTTCATCTGCTTCACCAGCGTGGTGTGAGCTATTTGTTTCACGCTAGACATTGGTGGTCGAAATCATT