Basic Information
VIS ID
TVIS44009111
Fusion event
HTLV-1-LOC105378641 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
34994792/34529191 (Hg38)
End
34994792/34529191 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378641
Nearest miRNA
hsa-mir-12136/Upstream/1196699; hsa-mir-101-1/Downstream/140408;
Nearest TSS
ENST00000473358/Upstream/351521; ENST00000338513/Downstream/225856;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/351768, chr1-CpG: 22/Downstream/232236
Nearby gene
MIR552(-140408) ;
Upstream sequence
attagtcagctcatgtgctagaatagcgtctggACGAACCTTATTATTAAGGAGTCTGATGAGATTGCAAGATGGATAATGTCAGGAGGCTTCCTTGTGA
Downstream sequence
CAGcagaggaagacctctttaagctagccttagaaacgcttcctagaggaagtaacgctgcagctgaagctctcacaataaataggaACATGTTCGAGCA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate