Basic Information
VIS ID
TVIS44009161
Fusion event
HTLV-1-LRRC56 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
551673/551673 (Hg38)
End
551673/551673 (Hg38)
Orient
-
Location type
Exonic
Target gene
LRRC56
Nearest miRNA
hsa-mir-6743/Upstream/342267; hsa-let-7a-2/Downstream/16416;
Nearest TSS
ENST00000527297/Upstream/14146; ENST00000527620/Downstream/4747;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/9446, chr11-CpG: 174/Downstream/3040
Upstream sequence
CCCCTGGTCTGTGGACAGAGTCTGGGGGGCGCTCTCAGGCTGGGCCTTGGTGACCTCTGCTTCTGAACCTCGGGCAGACTGTCCCCGTGGAGCCCCCATC
Downstream sequence
CGGAGACTTGACCCCGAGCTGTCCCTGCCTGAGACGCAGTCCCGGGCCTCCAGGCCCTGGCCCTTCTCCCTGCTGGTCCGTGGGGGCCCCCTGCCTGAAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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