Basic Information
VIS ID
TVIS44009176
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
56474119/56706643 (Hg38)
End
56474119/56706643 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/8609785; hsa-let-7a-2/Downstream/37230;
Nearest TSS
ENST00000527297/Upstream/6255; ENST00000532274/Downstream/37168;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/831999, chr11-CpG: 78/Downstream/617754
Nearby gene
OR9G9(No orient, 5338)
Upstream sequence
aggtagagtcacaatccctctccacatgcaacatcagcattcctgcagatgaaaagaggtgctggtctgatctgaataaccagaacactaggtacagttt
Downstream sequence
gtgactcatgtgccttggaggtggatcagtttcctgctggcctggtaggagagctaaggtggcttcctcccaaccctctgtaaagacctcactgtgtttc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate