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VISDB
Viral Integration Site DataBase
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TVIS44009234
Basic Information
VIS ID
TVIS44009234
Fusion event
HTLV-1-PCDH9-AS2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
67423614/66849482 (Hg38)
End
67423614/66849482 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA13B
Target gene
PCDH9-AS2
Nearest miRNA
hsa-mir-1297/Upstream/631158; hsa-mir-1267/Downstream/10848530;
Nearest TSS
ENST00000623511/Upstream/24313;
ENST00000611609/Downstream/30553;
Nearest CpG islands
None/Target,
chr13-CpG: 551/Upstream/3004936
,
chr13-CpG: 92/Downstream/380894
Upstream sequence
CATGTGATAAGACATTCAAGGATGATACCATATatatatgaaaatatatgactatatatgactatatatgacaatatatgacatctatgacaatCATAGG
Downstream sequence
TAGGtatatatatatatatatatatatatatatatagagagagagagagagagagagagagagaTTGCAAATCTTACCTGGGAATGCCTTTAAGGCATGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL6
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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