Basic Information
VIS ID
TVIS44009241
Fusion event
HTLV-1-GPC6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
94262378/93610125 (Hg38)
End
94262378/93610125 (Hg38)
Orient
+
Location type
Intronic
Target gene
GPC6
miRNAs that regulate target gene
hsa-mir-361-5p ; hsa-mir-1279 ; hsa-mir-483-5p ; hsa-mir-32-3p ; hsa-mir-7161-5p ; hsa-mir-548u
Nearest miRNA
hsa-mir-1297/Upstream/1119905; hsa-mir-1267/Downstream/2817104;
Nearest TSS
ENST00000623511/Upstream/382808; ENST00000617456/Downstream/226019;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/381501, chr13-CpG: 59/Downstream/939181
Upstream sequence
GTGACCCTGTCATATGGCTGCTGAATGAGGACATGGATGAAAGAAGTCATTTACATTTTGAGCACTTCCTGGTTGAGCCACCAATTTCATGAGATACAAT
Downstream sequence
ATCTTCCCTGTGGTGTGATCCCTTTGGATATTTCTTTACACTCTGTTGTAGATTTTACGGAAAAAACTTCGTAAGTTTCAATTTTAACTAGATGGAGGGG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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