VISDB Viral Integration Site DataBase

VIS ID

TVIS44009250

Fusion event

HTLV-1-TXNDC16 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr14

Cytoband

q22.1

Reference genome

Start

End

52977363/52510645 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-29c-3p ; hsa-mir-10b-5p ; hsa-mir-585-5p ; hsa-mir-4316 ; hsa-mir-4710 ; hsa-mir-4722-5p ; hsa-mir-6804-5p ; hsa-mir-125a-3p ; hsa-mir-6885-5p ; hsa-mir-552-3p ; hsa-mir-328-5p ; hsa-mir-486-3p ; hsa-mir-3622b-5p ; hsa-mir-1827 ; hsa-mir-4532 ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-5197-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-3671 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3163 ; hsa-mir-892c-3p ; hsa-mir-4676-3p ; hsa-mir-452-5p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-5692a ; hsa-mir-2909 ; hsa-mir-1296-5p ; hsa-mir-1258 ; hsa-mir-6781-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6499-5p ; hsa-mir-5693 ; hsa-mir-4512 ; hsa-mir-7160-3p ; hsa-mir-6895-5p ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-7977 ; hsa-mir-566 ; hsa-mir-7160-5p ; hsa-mir-6720-3p ; hsa-mir-6499-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4537 ; hsa-mir-20b-3p ; hsa-mir-17-3p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-5690 ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-596 ; hsa-mir-125b-2-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3913-5p ; hsa-mir-3974 ; hsa-mir-4433a-3p ; hsa-mir-4457 ; hsa-mir-4459 ; hsa-mir-450a-1-3p ; hsa-mir-4728-5p ; hsa-mir-4767 ; hsa-mir-513b-5p ; hsa-mir-6087 ; hsa-mir-6089 ; hsa-mir-624-3p ; hsa-mir-6513-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-887-5p

Nearest miRNA

hsa-mir-208a/Upstream/2210699; hsa-mir-1185-1/Downstream/1437782;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/195354, chr14-CpG: 126/Downstream/41675

Upstream sequence

tcatctaaattaacttctgagtagacggattaagtgacttcttaaaacttttccttcatacttggctgcaatgtttggattacttataatacacatgcac

Downstream sequence

cactttTATATTTTAAAAAAGACATACTGAATGAGAATATCTACTAAAGATTTTACATGTGCTCAACACAACCCTTCAACTTTTCGGAGAGAACAGTTTG