Basic Information
VIS ID
TVIS44009260
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
24017257/23772110 (Hg38)
End
24017257/23772110 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1268a/Upstream/209979; hsa-mir-10393/Downstream/2076637;
Nearest TSS
ENST00000557528/Upstream/84780; ENST00000562975/Downstream/140299;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/84659, chr15-CpG: 21/Downstream/105974
Nearby gene
NDN(-84807) ;
Nearest cancer related gene
NDN(TSG, -84807) ;
Upstream sequence
tttttaatacatgtggggctactcaggttaatatatttttctgtgtgtgagttttcatacttgtgatttttaagtaattaatttattttatcaaagttac
Downstream sequence
catatttgtggacatagaatttttcacagtatgctcttattatcctgttaatactcataagatcaatagtgactcctctttttttttctgatatttgttt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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