Basic Information
VIS ID
TVIS44009361
Fusion event
HTLV-1-TMEM177 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
120450421/119692845 (Hg38)
End
120450421/119692845 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
TMEM177
Nearest miRNA
hsa-mir-1285-2/Upstream/5971477; hsa-mir-10b/Downstream/7730692;
Nearest TSS
ENST00000437798/Upstream/13642; ENST00000460162/Downstream/66786;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/13411, chr2-CpG: 86/Downstream/66645
Nearby gene
TMEM177(+10727) ;
Upstream sequence
gtggatcacttgaggtcaagagtttgagaccagcctgaccaacatggtgaaaccccatttctactaaaagtacaaaaattagccgggtgtggtggtggca
Downstream sequence
cctgtaatcccagctactctgaaggctgaggtgggagaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcacgccactgcactccagcc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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