VISDB Viral Integration Site DataBase

VIS ID

TVIS44009433

Fusion event

HTLV-1-ZBTB38 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q23

Reference genome

Start

End

141122743/141403901 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30b-5p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-877-3p ; hsa-mir-877-5p ; hsa-mir-155-5p ; hsa-mir-3973 ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-4314 ; hsa-mir-513a-5p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-34b-3p ; hsa-mir-5583-3p ; hsa-mir-4517 ; hsa-mir-10a-3p ; hsa-mir-7702 ; hsa-mir-302c-5p ; hsa-mir-151a-3p ; hsa-mir-3143 ; hsa-mir-5003-3p ; hsa-mir-6071 ; hsa-mir-6828-3p ; hsa-mir-4753-3p ; hsa-mir-130b-5p ; hsa-mir-4778-5p ; hsa-mir-2115-3p ; hsa-mir-216b-5p ; hsa-mir-8087

Nearest miRNA

hsa-let-7g/Upstream/6965995; hsa-mir-1224/Downstream/10161975;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/1065, chr3-CpG: 16/Downstream/82796

Upstream sequence

tgtcaaccactttgtgggtgtttgacttatgtgttcaatatgtgctaattgcagttattattGTTGCTAAAAGATGAAATCCTAGCAGCTAGTCATGGGA

Downstream sequence

CACTGCACTTTTTTTTTCTTTTTAGATCTTGATGTGGAAGAAATGGAGGACTCAGAACCAAGGATTTCCAAGTGATTTCTTCCAAAGCACAGGAATCTCA