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TVIS44009472
Basic Information
VIS ID
TVIS44009472
Fusion event
HTLV-1-ANTXR2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.21
Reference genome
GRCh37/hg19
Start
80982247/80061093 (Hg38)
End
80982247/80061093 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANTXR2
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-186-5p
;
hsa-mir-6817-3p
;
hsa-mir-7110-3p
;
hsa-mir-943
;
hsa-mir-4439
;
hsa-mir-3136-5p
;
hsa-mir-466
;
hsa-mir-4672
;
hsa-mir-6857-3p
;
hsa-mir-3941
;
hsa-mir-6855-3p
;
hsa-mir-4513
;
hsa-mir-7161-3p
;
hsa-mir-888-3p
;
hsa-mir-6768-5p
;
hsa-mir-5190
;
hsa-mir-548p
;
hsa-mir-5692a
;
hsa-mir-6788-5p
;
hsa-mir-30c-2-3p
;
hsa-mir-30c-1-3p
;
hsa-mir-6778-5p
;
hsa-mir-1233-5p
;
hsa-mir-8085
;
hsa-mir-6731-5p
;
hsa-mir-6878-5p
;
hsa-mir-1288-5p
;
hsa-mir-4678
;
hsa-mir-5694
;
hsa-mir-3529-3p
;
hsa-mir-377-3p
;
hsa-mir-4724-3p
;
hsa-mir-342-3p
;
hsa-mir-8485
;
hsa-mir-889-3p
;
hsa-mir-1277-5p
;
hsa-mir-6809-3p
;
hsa-mir-6833-3p
;
hsa-mir-4768-5p
;
hsa-mir-629-3p
;
hsa-mir-937-5p
;
hsa-mir-6873-3p
;
hsa-mir-6867-3p
;
hsa-mir-4713-5p
;
hsa-mir-642a-5p
;
hsa-mir-5702
;
hsa-mir-4685-3p
;
hsa-mir-4287
;
hsa-mir-7113-3p
;
hsa-mir-4469
;
hsa-mir-2276-5p
;
hsa-mir-6892-3p
;
hsa-mir-5571-5p
;
hsa-mir-8081
;
hsa-mir-627-5p
;
hsa-mir-6830-3p
;
hsa-mir-3065-5p
;
hsa-mir-3613-3p
;
hsa-mir-1264
Nearest miRNA
hsa-mir-12113/Upstream/3485467; hsa-mir-1243/Downstream/2692244;
Nearest TSS
ENST00000502981/Upstream/95996;
ENST00000506547/Downstream/10527;
Nearest CpG islands
None/Target,
chr4-CpG: 46/Upstream/96099
,
chr4-CpG: 81/Downstream/11128
Upstream sequence
ctggctgttgcctaggagttcagctaagactgttaaccagagtctcgattctcctccacatggctaggttgggcttcttcctagcatggtggtctcagag
Downstream sequence
tagtcaaagttttcatatgacagatggtttccaagaaaacaatagaggaaactaccatgccttaataaatcttaggcctggaactcaaactggcagtttc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL6
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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