Basic Information
VIS ID
TVIS44009505
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
67510057/68214229 (Hg38)
End
67510057/68214229 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/8510526; hsa-mir-103a-1/Downstream/3955238;
Nearest TSS
ENST00000502646/Upstream/24353; ENST00000517643/Downstream/1491;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1050462, chr5-CpG: 159/Downstream/815
Nearby gene
PIK3R1(+1527) ;
Nearest cancer related gene
PIK3R1(OG, +1527) ;
Upstream sequence
ACTGTTAGAGTTTGTTCAGAGCGGAACCTAAAGGAAATACTGGGAAGGTCACAGCAGTTTCATCTCAGCTTATTGGATTGGATCAAAGTAATTCTACTGC
Downstream sequence
AAGGCAAGGTATATCATTCCATTTACAGACAGAGAATGCATGAAGTCCTTCATTTCACACAGTAGGTGTGAAGAAGGTACCTTGGTAAATTTCCTATTTG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate