Basic Information
VIS ID
TVIS44009581
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
49044084/48131524 (Hg38)
End
49044084/48131524 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/5235249; hsa-mir-10400/Downstream/13583264;
Nearest TSS
ENST00000518652/Upstream/81944; ENST00000430626/Downstream/385565;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/335, chr8-CpG: 33/Downstream/128917
Nearby gene
UBE2V2(+69630) ;
Upstream sequence
cccctccaagtactgtatcctaaattttgtgtttatccctcccttgattttcttcacagttcttccacacgtttgttattttaaacaacagctagtttgg
Downstream sequence
tttttctgatttttgagtttaaaataaacagaatcatactttatatattattctgtgatttctagtttcattcagttctgtgtgtctctgagatttatcc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate