Basic Information
VIS ID
TVIS44009591
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
110964699/109952470 (Hg38)
End
110964699/109952470 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/5468005; hsa-mir-10400/Downstream/2691023;
Nearest TSS
ENST00000518652/Upstream/260679; ENST00000530667/Downstream/21473;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/260568, chr8-CpG: 79/Downstream/21414
Nearby gene
KCNV1(-14534) ;
Upstream sequence
atattctggaacagttttaccagcattggcacaagttcttctttgtatgtctactagaattcagctgtgagtccatctggttcagggcttcttttggttg
Downstream sequence
gtaggttttttttttattattattagtgattcagtatcagtgcttgttattggtcttttccaattttcactttcttcctggttcagttttgggagtttgt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate