Basic Information
VIS ID
TVIS44009604
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
33639708/33639710 (Hg38)
End
33639708/33639710 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/171775; hsa-let-7a-1/Downstream/1968384;
Nearest TSS
ENST00000422679/Upstream/1675; ENST00000416632/Downstream/9337;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/114912, chr9-CpG: 37/Downstream/37164
Nearby gene
ANXA2P2(+14176) ;
Upstream sequence
TCTAGAAAGCTGAATAATGTTCTCTCCCTCCTTTTCTTTCCCttgcatttttctaactactaatgaatttgagcacttcttcatgtgatagtggtcctgg
Downstream sequence
atttctgttctcaaaatggcctatccatatcctcaggcaaaattctctattgagagttctatattttcctcaacaatttgtaggaagtcctaagatatac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate