Basic Information
VIS ID
TVIS44009623
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
139058808/136166962 (Hg38)
End
139058808/136166962 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/1316155; hsa-mir-126/Downstream/352606;
Nearest TSS
ENST00000422679/Upstream/44441; ENST00000640235/Downstream/34712;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/32976, chr9-CpG: 27/Downstream/10947
Nearby gene
LHX3(-29288) ;
Upstream sequence
ctacaggtttatttggccacttgaggctgtgctgcatttttatggtctttttctctcttgctatgtcctcaaagtcactcaccttttcttccttcatgtc
Downstream sequence
tactctgttgttaattgtacccagtgtatgtttaagaatttgactgaagtcagggccgggcacggtggctcacgcctgtaatcccagccatttgggaggc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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