Basic Information
VIS ID
TVIS44009635
Fusion event
HTLV-1-LOC101928437 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
GRCh37/hg19
Start
112649505/113406278 (Hg38)
End
112649505/113406278 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101928437
Nearest miRNA
hsa-let-7f-2/Upstream/625490; hsa-mir-105-1/Downstream/1233157;
Nearest TSS
ENST00000429181/Upstream/565463; ENST00000371951/Downstream/531940;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/564691, chrX-CpG: 18/Downstream/984219
Upstream sequence
ctagtacaaccactGGGTTGTACtagttacttccaagatacaatggaggtacaggccttggataaatactctattccaaatgggagaaactgtccaaagc
Downstream sequence
aaaggggctacaggccccatacaagtctgaaatccaacaaggaagtcattaaatattaaagctccaaaatgattccctttgactccatgtttcacattca
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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