Basic Information
VIS ID
TVIS44009660
Fusion event
HTLV-1-LOC101929161 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
25565922/25564300 (Hg38)
End
25565922/25564300 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC101929161
Nearest miRNA
hsa-mir-12113/Upstream/1044010; hsa-mir-1243/Downstream/3255282;
Nearest TSS
ENST00000502981/Upstream/149148; ENST00000515188/Downstream/44411;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/57846, chr4-CpG: 58/Downstream/91197
Nearby gene
SLC34A2(+91513) ;
Upstream sequence
CACCTAGTAATTTGTTATTTCCTCCCTTCCTTGATTGTCTCCCCCCCGTTACCAATTAATACCATATTTATTAATTTCCTGCTATGAATATGACACTATC
Downstream sequence
TGCCGATGCTTTATTAAAATGTAAAATGACTCTTCCTCCTCAAGTAGGGTAGAGGcagtatagtttagtggttaaggcggataaggatactgattgactg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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