Basic Information
VIS ID
TVIS44009674
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
34326528/34326423 (Hg38)
End
34326528/34326423 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5A
Nearest miRNA
hsa-mir-10397/Upstream/1931948; hsa-mir-103a-1/Downstream/1821469;
Nearest TSS
ENST00000502646/Upstream/168302; ENST00000510386/Downstream/325465;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/318195, chr5-CpG: 131/Downstream/329595
Nearby gene
C1QTNF3-AMACR(-201895) ;
Upstream sequence
gttcaacatatcttttttAAAATCTAGTGAttttaacagatttatttggatacaatttacataaaataaaattaaatcacttaaaatttacatcttaact
Downstream sequence
cttggtcagttaataaaatcatgtaatcaaaatcacacttaaggtatatcaattgtatcaccctgtcgagtttcctcattctccattgcagtcagctcaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate