Basic Information
VIS ID
TVIS44009692
Fusion event
HTLV-1-LOC100505918 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
168376310/168407072 (Hg38)
End
168376310/168407072 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC100505918
Nearest miRNA
hsa-mir-101-1/Upstream/31451; hsa-mir-1182/Downstream/1744306;
Nearest TSS
ENST00000473358/Upstream/99055; ENST00000367818/Downstream/202;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/180471, chr1-CpG: 153/Downstream/698456
Upstream sequence
aagagacagggagagtacagtgagaatgtaggacaatcatctgactcttagaaagaggggaagaaaatagtgcatctgtcaaatttttctaatggggcag
Downstream sequence
aggtgatatttgaagtgataatgacagaatttttcaaaactgattaaagacattactccataattctaagaagtctaatgtgttccaaacaatatattta
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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