Basic Information
VIS ID
TVIS44009813
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
GRCh37/hg19
Start
72626670/72577519 (Hg38)
End
72626670/72577519 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1035430; hsa-mir-12124/Downstream/2636957;
Nearest TSS
ENST00000440867/Upstream/26967; ENST00000498315/Downstream/218071;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/129818, chr3-CpG: 24/Downstream/77653
Nearby gene
RYBP(-130896) ;
Upstream sequence
gctgactacaggcacgtgcccccacacccaactaatttttctattttttgtaaagacggggttttgccatgttggctgggctggtcttgaactcctgtcc
Downstream sequence
tcaagtgatctgcctgcctcaacctcccaaagtgctgagattacaggcataagccactgtgcccagtcTCTTTTCTTTCTCTTTTGCAAATAATCTATCT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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