Basic Information
VIS ID
TVIS44009866
Fusion event
HTLV-1-LMBRD1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
GRCh37/hg19
Start
70491958/69782066 (Hg38)
End
70491958/69782066 (Hg38)
Orient
-
Location type
Intronic
Target gene
LMBRD1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10398/Upstream/12391854; hsa-mir-10524/Downstream/1594894;
Nearest TSS
ENST00000381078/Upstream/549032; ENST00000478620/Downstream/8599;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1146912, chr6-CpG: 53/Downstream/14334
Upstream sequence
tttcccaattACTATCCTTTACTAATAAAACGTGAAAATCCACTATTATATAACCTTTCACCTACCTATTGGCAAAATTTAAAACAATAACATCCAGTAA
Downstream sequence
TGCCAAAATGTGGAGGGAAAGCCATCTGCTACACAGTAAGATAGTCTACCATGTAGACATTCTTTATTGAATCGATCCTAAAAATATTCACACAAATTAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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