Basic Information
VIS ID
TVIS44009938
Fusion event
HTLV-1-CDH20 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
59018911/61351678 (Hg38)
End
59018911/61351678 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA18B
Target gene
CDH20
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p
Nearest miRNA
hsa-mir-1-2/Upstream/2900520; hsa-mir-5011/Downstream/5729906;
Nearest TSS
ENST00000575820/Upstream/17405; ENST00000587582/Downstream/138864;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/17219, chr18-CpG: 64/Downstream/202540
Nearby gene
CDH20(+138864) ;
Upstream sequence
AGAACTTGTTTAGTTTGCCTCTATGTTACTTTTGGACAGCAAAAATAACTGCAAAGTCTAATTAAAAAAAAAAAACAATTTTCAGGTGATATGGGGATAG
Downstream sequence
TTTTAAAaagcagcacctttgggatgcctaaatctgtgtacaagctctgtgatattagccaggtaacttgatgtctttctttaaaatatattcctactac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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