Basic Information
VIS ID
TVIS44009958
Fusion event
HTLV-1-PDGFD integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
103883227/104012499 (Hg38)
End
103883227/104012499 (Hg38)
Orient
-
Location type
Intronic
Target gene
PDGFD
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-145-5p
Nearest miRNA
hsa-mir-10392/Upstream/162519; hsa-let-7a-2/Downstream/7335258;
Nearest TSS
ENST00000527297/Upstream/66951; ENST00000302259/Downstream/24081;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/920179, chr11-CpG: 43/Downstream/24178
Upstream sequence
tacttttctggataaatgcatgctattatcattttattaaaaagaatactgtgtgcttttaatgcagaccttttattctcccccaaagctattactaagt
Downstream sequence
caatgctaggtcatacaacggatggtgttttagaatGAAACAAGCTTTTTGTTTTCTTGTTAAAGCTCATGCTAACAAATCTCTTCAAATATCTTTGTGT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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