VISDB Viral Integration Site DataBase

VIS ID

TVIS44009975

Fusion event

HTLV-1-SLC38A2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.11

Reference genome

Start

End

46763333/46369550 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-101-3p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-18a-3p ; hsa-mir-193b-3p ; hsa-let-7e-5p ; hsa-mir-3161 ; hsa-mir-9-3p ; hsa-mir-3145-3p ; hsa-mir-4789-5p ; hsa-mir-599 ; hsa-mir-4704-5p ; hsa-mir-1245b-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-6857-5p ; hsa-mir-6878-3p ; hsa-mir-491-5p ; hsa-mir-4450 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-194-3p ; hsa-mir-4699-3p ; hsa-mir-1296-3p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-340-5p ; hsa-mir-199b-5p ; hsa-mir-199a-5p ; hsa-mir-1825 ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-455-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-8081 ; hsa-mir-4642 ; hsa-mir-1269b ; hsa-mir-1269a ; hsa-mir-4515 ; hsa-mir-1288-3p ; hsa-mir-4740-5p ; hsa-mir-4711-5p ; hsa-mir-6857-3p ; hsa-mir-4682 ; hsa-mir-2355-3p ; hsa-mir-4646-3p ; hsa-mir-4474-3p ; hsa-mir-3912-5p ; hsa-mir-548at-5p ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/4045691; hsa-let-7i/Downstream/818262;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/99925, chr12-CpG: 163/Downstream/1801

Upstream sequence

ATTCTATCGTGCTGGAGAAAATAACTTGAGTAGAAGGCACCAATCAGCTAAGTAAAACACATCTGTCACAAAGGGACAATTCCATGCTATATACATATGg

Downstream sequence

tttccttatctgtacaatgaaggtattaagttacacaatcCTCCACAGAAATTGCCTTAGCCAGGGGTCCACGGGTACTTAAACTTAAGGGCTATGACAC