Basic Information
VIS ID
TVIS44009978
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
13233989/13330672 (Hg38)
End
13233989/13330672 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/413330; hsa-mir-10226/Downstream/212857;
Nearest TSS
ENST00000595228/Upstream/23912; ENST00000580134/Downstream/225371;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/312423, chr17-CpG: 36/Downstream/165769
Nearby gene
HS3ST3A1(-163360) ;
Upstream sequence
AAAAATCTATTTTCTAAATGAGAATACAGCAATTTCTGAACCTTTAATGAAAAATCTATACTTTCCTCAAGGATCTAAAATGTCACCTTTATTATGTACC
Downstream sequence
AAATTCTCAAATAAACTGAATCTATCATGAACTCCCTATGTGCTAGAATTGACAACACATTTAGACTGACACATTTTAGAATTCATTTGTTAAGTTATGT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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