Basic Information
VIS ID
TVIS44009984
Fusion event
HTLV-1-LOC105377986 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
126065821/125744675 (Hg38)
End
126065821/125744675 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377986
Nearest miRNA
hsa-mir-10398/Upstream/5729418; hsa-mir-1202/Downstream/739956;
Nearest TSS
ENST00000381078/Upstream/70322; ENST00000368365/Downstream/353;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/380956, chr6-CpG: 232/Downstream/2901
Nearby gene
HEY2(+4911) ;
Upstream sequence
AGAATCCATATTTTTGGAACTCTGTGAGACAGTGGTTTTATTAATGTCAATTAATCTTGACAGCTTAGTAGATGGTTTATACAGCTATTAGAAGATATAC
Downstream sequence
TATTGTCTTCATTTATGCATAATGTAAATGCTATTATTCATGTTATAATTAACAGAGACACATGAGAATTTTAGACaaaataattattttaaataattaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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