Basic Information
VIS ID
TVIS44010013
Fusion event
HTLV-1-LOC101927690 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
57004513/56537795 (Hg38)
End
57004513/56537795 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101927690
Nearest miRNA
hsa-mir-208a/Upstream/1659602; hsa-mir-1185-1/Downstream/3109167;
Nearest TSS
ENST00000550708/Upstream/23464; ENST00000556975/Downstream/41825;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/418279, chr14-CpG: 41/Downstream/41959
Nearby gene
TMEM260(No orient, 41998)
Upstream sequence
aacaaaagttggaagctagcagaggttggtttatgaggtttaaagaaacatgatattaaagtgtaaggtgaagaaagtgctgacatagaagctgcagcgt
Downstream sequence
tatccaggaagatctagctaagatcatcaatgaaagtggatacactaaagaacagatttttaatgtaaatgaaacatccttctattggaggaatacacct
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate