Basic Information
VIS ID
TVIS44010060
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
195332671/195363541 (Hg38)
End
195332671/195363541 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/2226958; hsa-mir-1182/Downstream/1218872;
Nearest TSS
ENST00000473358/Upstream/1012598; ENST00000496761/Downstream/697532;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2241447, chr1-CpG: 24/Downstream/1245037
Nearby gene
KCNT2(-862239) ;
Upstream sequence
aatctaagaccaaaagctatgaaaccatcacaagaaatccttgggggagatctccagcatataggtctgggccaaaatttctcaaaccataccccagaag
Downstream sequence
cacaggcaaacagagcaaaaatggacaaataggatcacatcaagttaaaaagcttctacacagaaagggataaaatcaacaaagtgaagagacaaccaac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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