Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene98009391978787819794276297944086
Basic Information
VIS ID
TVIS44010094
Fusion event
HTLV-1-LINC02713 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
97815086/97944086 (Hg38)
End
97815086/97944086 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02713
Nearest miRNA
hsa-mir-10392/Upstream/1602560; hsa-let-7a-2/Downstream/3575734;
Nearest TSS
ENST00000527297/Upstream/1324; ENST00000532109/Downstream/732305;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1553663, chr11-CpG: 34/Downstream/1076727
Nearby gene
CNTN5(+1076620) ;
Upstream sequence
attTTTCTCTTTTAGTGGAAATTTATATACATAATATATAATTTGTCATTTTTATGTGTaaaatgtttttgtcacctctcccaaaaaactttgtaatttt
Downstream sequence
taaggaataaccaatagtcccctattccacaaaacctggtaacctctaatttattgaatgtctctatgaatttgcttactgtagatattttcttcaaatt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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