Basic Information
VIS ID
TVIS44010109
Fusion event
HTLV-1-POLR3B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
106800490/106406712 (Hg38)
End
106800490/106406712 (Hg38)
Orient
-
Location type
Intronic
Target gene
POLR3B
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-let-7i/Upstream/1814996; hsa-mir-1178/Downstream/2229098;
Nearest TSS
ENST00000382841/Upstream/24740; ENST00000549195/Downstream/3532;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/48525, chr12-CpG: 41/Downstream/173922
Upstream sequence
caaacatgctagatgatttgcgttgtcacccagctggttagtggtaagagtaagggttagaacctatcttctggccttgaactagtATGtaatatttatt
Downstream sequence
ttttattaatttattattaaaCAGAGATCAACCATATTGGCATGTGGGGTGTTGGCAAGAGGCAGCCCTCAATTTTCTTCCCATTTAATGTATATGCTAC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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