Basic Information
VIS ID
TVIS44010153
Fusion event
HTLV-1-LOC105371953 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
1236259/1236258 (Hg38)
End
1236259/1236258 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371953
Nearest miRNA
hsa-mir-8078/Upstream/1123919; hsa-mir-1-2/Downstream/2649095;
Nearest TSS
ENST00000575820/Upstream/77117; ENST00000583163/Downstream/122504;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/326685, chr18-CpG: 33/Downstream/1335029
Nearby gene
LINC00470(-32053) ;
Upstream sequence
tcttgctgttctcagaattttctctttgccattgtctttcaacattttgaacataattttctggatgtgaatatcttttgcatttatcctacttgaagtt
Downstream sequence
tcctgagctccttggatttgcagattaatatttgttttttattaaatgtagaaagttaccagccactatatctccattatgtctttaaatatttttgtac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate