Basic Information
VIS ID
TVIS44010196
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
29268075/29226584 (Hg38)
End
29268075/29226584 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/3561645; hsa-let-7g/Downstream/1935120;
Nearest TSS
ENST00000440867/Upstream/361360; ENST00000471426/Downstream/54320;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/650105, chr3-CpG: 88/Downstream/1379911
Nearby gene
RBMS3-AS3(No orient, 37610)
Upstream sequence
aagaagcaagaagataaaaggaactgaagaagaaataaaaaggcttatttggctgggatggtagaaagggcacccctctgcagtaacttaagggatcatg
Downstream sequence
aaggtcaaagaaatgggagctgtagctcccattcagtgaatgagtagtttttatacaagggagctgagagcatctccatccagctgcttctacttttttc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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