Basic Information
VIS ID
TVIS44010242
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
190188983/189267829 (Hg38)
End
190188983/189267829 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4329389;
Nearest TSS
ENST00000502981/Upstream/74729; ENST00000513681/Downstream/23507;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/470562, chr4-CpG: 157/Downstream/39577
Nearby gene
LINC01262(No orient, 391777)
Upstream sequence
TTCGCAGCCATGTCAGTCTTGTGGTGGAAACAGATGGTCTCTGTGGCTGCAGGGTAAAGTAGAGGGAGAAAAATTGAGGTTTGGCTTCTGAATCATGTGT
Downstream sequence
ATCTGAATTATAAAAGGGTAGAGAGCCTTCTAATTGAAACTTGAATCACATTTTGATGTCAGTTGTCATAAGGGATCTTTGACCTAACCTAAAGTCAGGG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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