Basic Information
VIS ID
TVIS44010280
Fusion event
HTLV-1-RNASET2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
167361171/166947683 (Hg38)
End
167361171/166947683 (Hg38)
Orient
-
Location type
Intronic
Target gene
RNASET2
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-10398/Upstream/438250; hsa-mir-3939/Downstream/50124;
Nearest TSS
ENST00000381078/Upstream/3630; ENST00000476078/Downstream/4851;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/45141, chr6-CpG: 107/Downstream/8268
Nearest cancer related gene
RNASET2(TSG, No orient, 0)
Upstream sequence
GGACACCACGCAAAGTCTAGCAAAGCCAGGAGCCCCAGAGACAGGAGGTCAAGGTTATCTGACCAGACAGAGAAGAAAGTGAAACCCGAAGCCAAGTACC
Downstream sequence
TACATCCCAGTTTAACTTGTTTTCCACCAATCCCTCTTCCTAAGGAGCCAGGAGGCACCAATTAAGCTAAAAGGGCCCTTTTCAATCCCGGCATCGAGGC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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