VISDB Viral Integration Site DataBase

VIS ID

TVIS44010294

Fusion event

HTLV-1-ZNF277 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

q31.1

Reference genome

Start

End

111889438/112249383 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7151-3p ; hsa-mir-6807-5p ; hsa-mir-5095 ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-4438 ; hsa-mir-6788-5p ; hsa-mir-7113-5p ; hsa-mir-30c-2-3p ; hsa-mir-4325 ; hsa-mir-30c-1-3p ; hsa-mir-7703 ; hsa-mir-500a-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-767-5p ; hsa-mir-4524a-3p ; hsa-mir-3192-5p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-508-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-8087 ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-2355-3p ; hsa-mir-4646-3p ; hsa-mir-676-3p ; hsa-mir-501-5p ; hsa-mir-1224-5p ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-4751 ; hsa-mir-4677-3p ; hsa-mir-1197 ; hsa-mir-1290 ; hsa-mir-3167 ; hsa-mir-5004-3p ; hsa-mir-876-5p

Nearest miRNA

hsa-mir-10525/Upstream/9777852; hsa-mir-10399/Downstream/2403962;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/42551, chr7-CpG: 92/Downstream/142037

Upstream sequence

AACCAATAAATACATAGGTCCAATGAACAAAATAAGTAATAAAATATTGGCTTTAATACTCAAAATTAGGGGTTCCCTCTTAAACTGTTAGTAGATGTGA

Downstream sequence

CTTTGTACTGTGTTAAATGAGCCATTTGATCCCTTTCATGCCTCGGGGATTGGAAGAGAGAGGTCTGCTTAGTAGATACTTAAACCAGATAGCTGTGTAA