Basic Information
VIS ID
TVIS44010312
Fusion event
HTLV-1-CNBD1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
88179319/87167091 (Hg38)
End
88179319/87167091 (Hg38)
Orient
-
Location type
Intronic
Target gene
CNBD1
Nearest miRNA
hsa-mir-12123/Upstream/6925618; hsa-mir-10400/Downstream/4038394;
Nearest TSS
ENST00000518652/Upstream/122599; ENST00000522105/Downstream/38903;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/652047, chr8-CpG: 25/Downstream/706852
Upstream sequence
TGACCATATAAAATATTTTACAtttttgattgtagaaataatatgtttattgcaaaagaaagtaaaaaatacatggaaatattaggataaagtaatattt
Downstream sequence
accttaaatcccacaactttgatattgtaaccattaacacctctgtgcctaccctttcaaatttttatttttatATTCAATCAAGCACATTTATACTTAA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate