Basic Information
VIS ID
TVIS44010376
Fusion event
HTLV-1-LOC101928446 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
82814822/82781217 (Hg38)
End
82814822/82781217 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101928446
Nearest miRNA
hsa-mir-1225/Upstream/92198; hsa-mir-11401/Downstream/727129;
Nearest TSS
ENST00000527434/Upstream/154178; ENST00000569454/Downstream/144741;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/153009, chr16-CpG: 67/Downstream/1026590
Upstream sequence
CTTGAGGTATCATTTCTGAAGAATAAAAGTGGCAGTTTTAATATGCAGGCAATTTTTTAAAACAATGAAATAGAGATGTGATTATTGCCAGGGCAAGGCT
Downstream sequence
GTTTAGTTGCCACAGGGAAACATTATACCAATTGGCCTATAGCTTGAAATTACAGCATTCTCTATATTCGTCCAGCTTTAGGGAAATGCAGACCACAAGG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate