Basic Information
VIS ID
TVIS44010421
Fusion event
HTLV-1-LRRC4C integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
40556348/40534798 (Hg38)
End
40556348/40534798 (Hg38)
Orient
-
Location type
Intronic
Target gene
LRRC4C
Nearest miRNA
hsa-mir-1343/Upstream/4524594; hsa-let-7a-2/Downstream/3024858;
Nearest TSS
ENST00000527297/Upstream/215068; ENST00000524493/Downstream/859797;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/4024331, chr11-CpG: 49/Downstream/2777091
Upstream sequence
gggctcagaaatgtcccttcgtatattttacaaaaagagtgtttgcaacctgctgaatcaaaCCCTTTTGGTTTTAGGGCAAATTGTCCATTACTATTTG
Downstream sequence
AAATTTAAGAAGTCAAAGAGGAAGGCACTGATGAGTTATGAAGGATAATGGTGTTTAGCTATACTTAAATATCTTCACACAAGCCTTAGTAACAGTAAAA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate