Basic Information
VIS ID
TVIS44010426
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
97498428/97627428 (Hg38)
End
97498428/97627428 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/1285902; hsa-let-7a-2/Downstream/3892392;
Nearest TSS
ENST00000527297/Upstream/367441; ENST00000532109/Downstream/315334;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1237005, chr11-CpG: 34/Downstream/1393385
Nearby gene
JRKL-AS1(No orient, 1258387)
Upstream sequence
agtggacagaatttaaagcagtgtccacagtcaaggacttggaaggaacacaattgaaaactggctctgagtagttcttgggaaaagatggatggatagc
Downstream sequence
cttcttagaatgacaacaaagtgtgaatatatatatacacacacacacatatgtatatgtctccatatatatttatgtataaatttatattatatttatg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate